University has "Board of Management" as the ultimate administrative authority. On behalf of that management body, the Vice-Chancellor looks after every activities of the University as the supreme authority. Personnel management is handled by the Office of Registrar. The Office of Comptroller oversees financial management.
The University has the following Directorates
The Directorates supervises various activities falling under their jurisdictions.
The Faculties of Agriculture, Veterinary Science, Community Science, Horticulture, Sericulture and Fisheries Science are headed by the Deans assisted by Associate Deans of constituent Colleges.
| # | Admin. Heads | Tel. | Fax | |
| 01 | Dr. Bidyut Chandan Deka, Vice Chancellor, AAU, Jorhat -785013 | 0376-2340013 | 0376-2340001 | vc[at]aau.ac.in |
| 02 | Mr. Arpan Kr. Saikia, Registrar, AAU, Jorhat -785013 | 0376-2340008 | 0376-2340008 | registrar[at]aau.ac.in |
| 03 | Dr. Anup Das, Joint Registrar(Academic), AAU, Jorhat -785013 | 0376-2340007 | 0376-2340001 | jt.reg[at]aau.ac.in |
| 04 | Dr. Biren Sarmah, Joint Registrar, AAU, Khanapara, Guwahati - 781022 | 0361-2361175 | 0361-2361175 | jtreg_vety[at]aau.ac.in |
| 05 | Dr. Ashok Bhattacharyya, Director of Research (Agri), AAU, Jorhat - 785013 | 0376-2340044 | 0376-2340044 | dr_agri[at]aau.ac.in |
| 06 | Dr. Niranjan Kalita, Director of Research (Vety. Science), AAU, Khanapara, Guwahati - 781022 | 7086077669 | dr_vety[at]aau.ac.in | |
| 07 | Dr. Ajit Baishya, Director of Post Graduate Studies, AAU, Jorhat - 785013 | 0376-2340323 | 0376-2340323 | dpgs[at]aau.ac.in |
| 08 | Dr. Prasanna Kr. Pathak, Director of Extension Education, AAU, Jorhat - 785013 | 0376-2340029 | 0376-2310708 | dee[at]aau.ac.in |
| 09 | Dr. Rana Pratap Bhuyan, Director of Students' Welfare, AAU, Jorhat - 785013 | 0376-2310096 | 0376-2340101 | dsw[at]aau.ac.in |
| 10 | Dr. Jayanta Deka, Dean, Faculty of Agriculture, AAU, Jorhat - 785013 | 0376-2340101 | 0376-2340101 | dean_agri[at]aau.ac.in |
| 11 | Dr. Bibek Saikia, Dean, Faculty of Veterinery Science, AAU, Khanapara, Guwahati - 781022 | 0361-2337700 | 0376-2337700 | dean_vety[at]aau.ac.in |
| 12 | Dr. Ruplekha Borah, Dean, Faculty of Community Science, AAU, Jorhat - 785013 | 0376-2340011 | 0376-2340011 | dean_comsc[at]aau.ac.in |
| 13 | Dr. K. K. Tamuli, Dean, Faculty of Fisheries Science, Raha, Nagaon - 782103 | 03672-285010 | 03672-285010 | dean_fishery[at]aau.ac.in |
| 14 | Dr. Ranen Barman, Associate Dean, B.N.C.A., Biswanath Chariali - 784176 | 03715-222131 | 03715-222131 | ranendra.barman[at]aau.ac.in |
| 15 | Dr. Uma Tamuli, Associate Dean, L.C.V.Sc., Joyhing, North Lakhimpur - 787001 | 9435085401 | umatamuli[at]aau.ac.in | |
| 16 | Dr. Ranjit Sarma, Associate Dean, S.C.S.C.A., Rangamati, Dhubri - 785614 | 8133909993 9435066295 |
cadhubri[at]aau.ac.in |