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University has "Board of Management" as the ultimate administrative authority. On behalf of that management body, the Vice-Chancellor looks after every activities of the University as the supreme authority. Personnel management is handled by the Office of Registrar. The Office of Comptroller oversees financial management.
The University has the following Directorates
The Directorates supervises various activities falling under their jurisdictions.
The Faculties of Agriculture, Veterinary Science, Community Science, Horticulture, Sericulture and Fisheries Science are headed by the Deans assisted by Associate Deans of constituent Colleges.
| # | Admin. Heads | Tel. | Fax |
| 01 | Vice Chancellor, AAU, Jorhat -785 013 | 0376-2340001, 2340013 | 0376-2340001 |
| 02 | Registrar, AAU, Jorhat -785 013 | 0376-2340008 | 0376-2340008 |
| 03 | Joint Registrar, AAU, Jorhat -785 013 | 0376-2340007 | 0376-2340007 |
| 04 | Joint Registrar, AAU, Khanapara, Guwahati - 781022 | 0361-2361175 | 0361-2361175 |
| 05 | Director of Research (Agri), AAU, Jorhat - 785013 | 0376-2340044 | 0376-2340044 |
| 06 | Director of Research (Vety. Science), AAU, Khanapara, Guwahati - 781022 | ||
| 07 | Director of Post Graduate Studies, AAU, Jorhat - 785013 | 0376-2340323 | 0376-2340323 |
| 08 | Director of Extension Education, AAU, Jorhat - 785013 | 0376-2340029 | 0376-2310708 |
| 09 | Director of Students' Welfare, AAU, Jorhat - 785013 | 0376-2310096 | |
| 10 | Dean, Faculty of Agriculture, AAU, Jorhat - 785013 | 0376-2340101 | 0376-2340101 |
| 11 | Dean, Faculty of Veterinery Science, AAU, Khanapara, Guwahati - 781022 | 0361-2337700 | 0376-2337700 |
| 12 | Dean, Faculty of Community Science, AAU, Jorhat - 785013 | 0376-2340011 | 0376-2340011 |